PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G214800.2
Common NameB456_007G214800, LOC105803930
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 388aa    MW: 42299 Da    PI: 5.3738
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G214800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.67.3e-16139185455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Gorai.007G214800.2 139 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 185
                         6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-20132195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-20132195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.42E-17138189No hitNo description
PfamPF000102.5E-13139185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MGDNVNLNMF HYKNINNNCY NYNNGTCLPP PPSSDDISNL LHQILGHSSS YSSSSSSSSG  60
MAHFGGPSEN PRRLSPSPAP PGGGVKQGGG WGLVGAPGEN DTDEYDCESE EGIEALVDEA  120
LPKPAPPRSS SKRSRAAEVH NLSEKRRRSR INEKMKALQN LIPNSNKTDK ASMLDEAIEY  180
LKQLQLQVQM LSMRNGLSLH PMCLPGVLQP LQFSQTRMNF GEENGSLPMN MSDTVPANPE  240
TSVQMVFDLP NQCCSSNPGS VPNMSNIITS ETSFGLESIQ AHFGPFQFLS SSQDICREDI  300
LHHHQLKTNT PEFGLAATTT VSLPFDTRES DLKESCSLDA STMRREQSNS VLLKNLDHDL  360
ILSPHHTRKQ AGRSDTGDEI GIDTPNF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491829.10.0PREDICTED: transcription factor SPATULA-like isoform X2
SwissprotQ9FUA41e-60SPT_ARATH; Transcription factor SPATULA
TrEMBLA0A0D2QX770.0A0A0D2QX77_G
STRINGVIT_07s0031g00450.t011e-121(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-58bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]